dinhdiep / MONOD2
MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data
☆35Updated 5 years ago
Related projects: ⓘ
- Allele-specific alignment sorting☆52Updated last year
- ☆80Updated this week
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- ☆35Updated last year
- Reference data: BED files, genes, transcripts, variations.☆80Updated 6 years ago
- ☆37Updated 7 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆61Updated 8 months ago
- ☆102Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆67Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆45Updated 5 years ago
- DCC/DAC methylation pipeline source☆54Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 3 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 6 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆90Updated 4 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆93Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆59Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆80Updated last week
- ☆69Updated 4 months ago
- ☆87Updated 3 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆89Updated 7 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆71Updated last year
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆43Updated 5 months ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 2 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- ☆65Updated last year
- identifying mutational significance in cancer genomes☆59Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆41Updated last year
- STARRPeaker: STARR-seq peak caller☆14Updated 2 years ago