VUmcCGP / wisecondorLinks
WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data.
☆46Updated last year
Alternatives and similar repositories for wisecondor
Users that are interested in wisecondor are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆24Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- CN-Learn☆29Updated 5 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- WisecondorX — An evolved WISECONDOR☆101Updated last month
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated 11 months ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Burden testing against public controls☆50Updated last year
- ☆41Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 10 months ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- A software for calculating telomere length☆70Updated 6 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated last month
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 7 years ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- ☆89Updated 4 years ago