jasminezhoulab / cfSortLinks
☆15Updated 2 months ago
Alternatives and similar repositories for cfSort
Users that are interested in cfSort are comparing it to the libraries listed below
Sorting:
- ☆74Updated 4 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆70Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated 2 months ago
- ☆117Updated 2 years ago
- ☆24Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ☆30Updated last year
- ☆76Updated 4 months ago
- Analysis pipeline for ATAC-seq Data☆61Updated 4 years ago
- ☆45Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated last month
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Tools which deal with multiple single cell measurements☆24Updated 3 weeks ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆151Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- ☆65Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 5 months ago
- Find circRNAs in RNA-seq data.☆15Updated 9 years ago
- ☆116Updated 2 years ago
- ☆88Updated 2 months ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated 3 weeks ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- circular RNA analysis toolset☆85Updated 11 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month