jasminezhoulab / cfSort
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for cfSort
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- ☆37Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆56Updated last month
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆13Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆37Updated last year
- An R package to time somatic mutations☆59Updated 3 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆47Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆13Updated last year
- Tutorial Website☆53Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆60Updated 2 years ago
- GLASS consortium☆37Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆31Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆41Updated 4 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- Fork of the Polysolver project☆30Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- Bioinformatics Workflows☆20Updated 3 years ago
- ☆70Updated 6 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 3 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆15Updated 2 years ago
- ☆27Updated 3 years ago
- ☆29Updated 2 years ago
- ☆45Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 4 months ago