ndbrown6 / MSK-GRAIL-TECHVAL
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
☆21Updated 4 years ago
Alternatives and similar repositories for MSK-GRAIL-TECHVAL:
Users that are interested in MSK-GRAIL-TECHVAL are comparing it to the libraries listed below
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- ☆13Updated 7 years ago
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Updated 5 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆34Updated 5 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- ☆23Updated 5 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆19Updated 6 years ago
- DriverPower☆26Updated last week
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- ☆11Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 8 months ago
- Readme☆10Updated 4 years ago