ndbrown6 / MSK-GRAIL-TECHVALLinks
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
☆22Updated 5 years ago
Alternatives and similar repositories for MSK-GRAIL-TECHVAL
Users that are interested in MSK-GRAIL-TECHVAL are comparing it to the libraries listed below
Sorting:
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Define regions in the genome☆33Updated 3 years ago
- ☆17Updated 6 years ago
- ☆44Updated 7 years ago
- Utility functions for FACETS☆39Updated 3 weeks ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- DriverPower☆26Updated 10 months ago
- CLIP Tool Kit (CTK)☆21Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- ☆33Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- ☆36Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last month
- ☆26Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- ☆19Updated 7 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago