ndbrown6 / MSK-GRAIL-TECHVALView external linksLinks
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
☆22Mar 27, 2020Updated 5 years ago
Alternatives and similar repositories for MSK-GRAIL-TECHVAL
Users that are interested in MSK-GRAIL-TECHVAL are comparing it to the libraries listed below
Sorting:
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Jan 18, 2026Updated 3 weeks ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 2 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 8 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- cfDNA cell type of origin estimation☆34Oct 19, 2023Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆19Oct 25, 2020Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Sep 23, 2017Updated 8 years ago
- Identify and correct invalid gene symbols☆62Nov 16, 2024Updated last year
- 🏺 Exploring novel tumor epitope identification☆38Oct 7, 2020Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 3 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Whole genome workflows☆12Nov 9, 2024Updated last year
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ☆11May 26, 2023Updated 2 years ago
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆16Oct 29, 2025Updated 3 months ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Jun 5, 2023Updated 2 years ago