heinc1010 / BAMixChecker
BAMixChecker: A fast and efficient tool for sample matching checkup
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for BAMixChecker
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Computes various SV statistics☆14Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆20Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- R package for DNA methylation analysis☆17Updated 3 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- Enabling differential allele-specific analysis☆11Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 3 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 2 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆15Updated 8 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆21Updated 3 weeks ago
- ☆18Updated last month
- Scripts for analyses and figures for SNP STR Imputation manuscript☆12Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- ☆15Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆20Updated last month
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated 3 weeks ago