heinc1010 / BAMixCheckerLinks
BAMixChecker: A fast and efficient tool for sample matching checkup
☆15Updated 3 years ago
Alternatives and similar repositories for BAMixChecker
Users that are interested in BAMixChecker are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 2 months ago
- Enabling differential allele-specific analysis☆11Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Computes various SV statistics☆14Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- ☆24Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- ☆23Updated 6 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 8 months ago
- ☆20Updated 2 years ago
- ☆20Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- fastx-utils using klib☆20Updated 5 years ago
- Third-generation fusion gene detection☆13Updated 2 years ago
- ☆12Updated last month
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆38Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago