heinc1010 / BAMixCheckerLinks
BAMixChecker: A fast and efficient tool for sample matching checkup
☆15Updated 3 years ago
Alternatives and similar repositories for BAMixChecker
Users that are interested in BAMixChecker are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Enabling differential allele-specific analysis☆11Updated 9 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago
- Computes various SV statistics☆14Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- CADD-SV – a framework to score the effect of structural variants☆15Updated 6 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Preprocessing sequencing data for allele-specific analysis☆12Updated 6 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- ☆20Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆23Updated 9 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- ☆20Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year