A simplified pipeline for ctDNA sequencing data analysis
☆38Sep 23, 2017Updated 8 years ago
Alternatives and similar repositories for ctdna-pipeline
Users that are interested in ctdna-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 8 months ago
- Detect and visualize target mutations by scanning FastQ files directly☆158Feb 10, 2022Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 7 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Microsatellite instability (MSI) detection for tumor only data.☆115Apr 23, 2024Updated 2 years ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- ☆15Apr 20, 2023Updated 3 years ago
- Tumor Mutational Burden☆65Mar 17, 2026Updated 3 months ago
- ☆10Sep 14, 2023Updated 2 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 3 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆208May 28, 2023Updated 3 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 9 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆15Jul 23, 2020Updated 5 years ago
- ☆19Jul 17, 2024Updated last year
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- A pipeline creation tool using Snakemake☆14Jun 8, 2026Updated last month
- awesome-bio-datasets☆243Oct 28, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆89Nov 11, 2020Updated 5 years ago
- Count bases in BAM/CRAM files☆325Jan 31, 2022Updated 4 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆177Aug 22, 2024Updated last year
- ☆37Mar 16, 2021Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago