Microsatellite instability (MSI) detection for tumor only data.
☆114Apr 23, 2024Updated 2 years ago
Alternatives and similar repositories for msisensor2
Users that are interested in msisensor2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- ☆126Sep 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆43Feb 9, 2024Updated 2 years ago
- a lightweight bam file depth statistical tool☆162Sep 13, 2024Updated last year
- ASCAT R package☆200Feb 12, 2026Updated 3 months ago
- ☆37Mar 16, 2021Updated 5 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Software program for checking sample matching for NGS data☆141Jun 20, 2024Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 6 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆24Feb 28, 2025Updated last year
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Apr 20, 2021Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- ☆56Jan 11, 2023Updated 3 years ago
- Personal Cancer Genome Reporter (PCGR)☆277Updated this week
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆91Jun 6, 2025Updated 11 months ago
- ☆175Updated this week
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Annotation and Ranking of Structural Variation☆296May 12, 2026Updated last week
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 3 weeks ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆123Aug 19, 2020Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Copy number variant detection from targeted DNA sequencing☆610Updated this week
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆117Sep 2, 2024Updated last year
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 8 years ago