niu-lab / msisensor2
Microsatellite instability (MSI) detection for tumor only data.
☆94Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for msisensor2
- ☆103Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- ☆70Updated 6 months ago
- ☆38Updated 9 months ago
- Relevant papers for CNV and SV approaches☆94Updated this week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆68Updated 3 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆103Updated this week
- WisecondorX — An evolved WISECONDOR☆94Updated last month
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ASCAT R package☆165Updated last week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆46Updated 2 months ago
- Software program for checking sample matching for NGS data☆125Updated 4 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆60Updated 2 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆141Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆140Updated last year
- ☆115Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆126Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆110Updated 3 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆151Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆92Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 3 months ago
- Allele-specific alignment sorting☆53Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago