niu-lab / msisensor2Links
Microsatellite instability (MSI) detection for tumor only data.
☆106Updated last year
Alternatives and similar repositories for msisensor2
Users that are interested in msisensor2 are comparing it to the libraries listed below
Sorting:
- ☆73Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆108Updated 2 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆130Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- Software program for checking sample matching for NGS data☆132Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- ☆41Updated last year
- ☆116Updated last year
- ASCAT R package☆181Updated 2 months ago
- Allele-specific alignment sorting☆56Updated 2 years ago
- ☆69Updated last year
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- ☆115Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated 2 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- ☆21Updated this week
- Tumor Mutational Burden☆58Updated 9 months ago
- phasing and Allele Specific Expression from RNA-seq☆115Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆70Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆54Updated 3 weeks ago