niu-lab / msisensor2Links
Microsatellite instability (MSI) detection for tumor only data.
☆112Updated last year
Alternatives and similar repositories for msisensor2
Users that are interested in msisensor2 are comparing it to the libraries listed below
Sorting:
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 8 months ago
- ☆117Updated 2 years ago
- Software program for checking sample matching for NGS data☆136Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆156Updated 2 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆108Updated last week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- ☆43Updated last year
- ASCAT R package☆192Updated 2 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆156Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆153Updated 4 months ago
- ☆81Updated 7 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- ☆155Updated 6 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- ☆72Updated 2 years ago