☆15May 19, 2022Updated 4 years ago
Alternatives and similar repositories for Palo
Users that are interested in Palo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- ☆12Jan 31, 2023Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆16Nov 7, 2024Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Oct 23, 2023Updated 2 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 10 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 10, 2026Updated last month
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 3 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 5 months ago
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last month
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- ☆21Jul 30, 2024Updated 2 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 6 years ago
- Gene set scoring for single-cell data☆212Sep 8, 2026Updated last month
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 8 months ago
- ☆14Dec 24, 2021Updated 4 years ago
- ☆32Apr 12, 2023Updated 3 years ago
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated 4 months ago
- The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R☆26Sep 6, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated 8 months ago
- An R package designed to demultiplex cell hashing data☆32Sep 10, 2026Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Jan 11, 2023Updated 3 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆25Sep 23, 2026Updated 2 weeks ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 months ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated 2 years ago
- ☆24Jan 10, 2025Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆37Jan 8, 2025Updated last year
- ☆35Jul 17, 2026Updated 2 months ago
- Repository for the code assignment of the Deep Learning 1 course, Fall 2021 edition☆10Oct 31, 2022Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Sep 28, 2026Updated last week