Alternatives and similar repositories for 1M-cells:

Users that are interested in 1M-cells are comparing it to the libraries listed below

• xiayh17 / RNAseqStat2
  ☆16Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• EngreitzLab / ABC-GWAS-Paper
  Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021
  ☆14Updated 4 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• immunogenomics / scHLApers
  Code to run the scHLApers pipeline for personalized single-cell HLA quantification
  ☆17Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• wulabupenn / scNT-seq
  Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
  ☆16Updated last year
• cemalley / scRNASeq-bulkRNASeq
  single cell and bulk RNASeq analysis scripts
  ☆12Updated 3 years ago
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆11Updated 3 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆13Updated 3 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆21Updated 2 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆25Updated 2 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 2 years ago
• YutingPKU / Bulk_RNA-Seq_Workflow_Snakemake
  STAR, cufflinks, cluster, DESeq2, GO analysis
  ☆14Updated 4 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• iaaaka / evo-devo
  ☆11Updated 4 years ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆16Updated 9 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆32Updated 3 years ago
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆24Updated last year
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆15Updated 3 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• nyuhuyang / scRNAseq-SSCs
  Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data
  ☆11Updated 2 years ago