favilaco / deconv_matching_bulk_scnRNALinks
Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
☆17Updated 2 years ago
Alternatives and similar repositories for deconv_matching_bulk_scnRNA
Users that are interested in deconv_matching_bulk_scnRNA are comparing it to the libraries listed below
Sorting:
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- A R package for advanced single cell data viz☆68Updated 2 months ago
- Methods for decontamination of single cell data☆50Updated 8 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆62Updated 6 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆44Updated last year
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- ☆50Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆66Updated last year
- ☆25Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated this week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Inferring CNV data from single cell ATAC seq☆25Updated 4 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 3 months ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago