favilaco / deconv_matching_bulk_scnRNALinks
Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
☆15Updated last year
Alternatives and similar repositories for deconv_matching_bulk_scnRNA
Users that are interested in deconv_matching_bulk_scnRNA are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- ☆31Updated 4 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- ☆32Updated 5 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 4 months ago
- scWGCNA☆60Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- ☆34Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Spatial transcriptomics analyses and decoding in R☆21Updated 3 months ago
- ☆29Updated 2 years ago