stjude / cis-xLinks
Search for activating regulatory variants in the tumor genome
☆14Updated 3 months ago
Alternatives and similar repositories for cis-x
Users that are interested in cis-x are comparing it to the libraries listed below
Sorting:
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- ☆22Updated 5 months ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆12Updated 4 years ago
- A tool for timing complex copy number gains in cancer.☆17Updated last week
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆17Updated this week
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- ☆13Updated last month
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- ☆13Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago