Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs) from spatial RNA-ATAC-seq data.
☆15Jun 9, 2026Updated 4 months ago
Alternatives and similar repositories for STARNet_tutorials
Users that are interested in STARNet_tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 施一公思维框架 Claude Code Skill☆23Apr 9, 2026Updated 6 months ago
- Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…☆16May 15, 2023Updated 3 years ago
- ☆28Jul 30, 2025Updated last year
- ☆14Dec 24, 2021Updated 4 years ago
- Code required to reproduce the analysis made in Kiviaho et al. 2024☆12Nov 29, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- single cell RNA-seq analysis template based on online resources☆11Jul 1, 2018Updated 8 years ago
- Pre-clinical drug discovery faces the low efficiency dilemma. One of the reasons is the lack of cross-drug efficacy evaluation infrastruc…☆14Dec 8, 2025Updated 10 months ago
- ☆15May 19, 2022Updated 4 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆52Apr 8, 2024Updated 2 years ago
- ☆39Apr 11, 2025Updated last year
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆52Jan 30, 2026Updated 8 months ago
- An R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.☆14May 19, 2026Updated 4 months ago
- Accurate and fast cell marker gene identification with COSG☆67Aug 25, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆15Feb 4, 2026Updated 8 months ago
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 5 months ago
- Visualize 3D ST data in Jupyter☆26Aug 21, 2026Updated last month
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 8 months ago
- A free Latex template (beamer) for Westlake Students or teachers☆36Jun 26, 2025Updated last year
- NeurIPS 2025☆16Feb 4, 2026Updated 8 months ago
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Oct 21, 2021Updated 4 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆24May 16, 2025Updated last year
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆35Aug 7, 2026Updated 2 months ago
- The computational and statistical analyses of TenK10K phase 1 multiome data☆19May 12, 2026Updated 4 months ago
- ☆16Jan 24, 2023Updated 3 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- Reinforcing Long-Term Performance in Recommender Systems with User-Oriented Exploration Policy (SIGIR 2024)☆14Oct 6, 2024Updated 2 years ago
- A new module for Megatron-LM training to enhance motif memory in Genomic☆18Feb 2, 2026Updated 8 months ago
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆58Sep 4, 2026Updated last month
- Robust and efficient analysis of single-cell perturbation studies☆16Sep 24, 2026Updated 2 weeks ago
- Structure based DTI prediction using FSQ discretization☆17Apr 19, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Jan 7, 2025Updated last year
- ☆16Mar 2, 2023Updated 3 years ago
- scEntropy method and scEGMM framework☆18Oct 26, 2019Updated 6 years ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,218Sep 23, 2026Updated 2 weeks ago
- The analysis of the 1KCP☆17Dec 3, 2025Updated 10 months ago
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆21Apr 16, 2026Updated 5 months ago
- a shell script that can automatically download vscode-server for you.☆29Dec 10, 2023Updated 2 years ago