biomed-AI / GraphCS
☆14Updated 3 years ago
Alternatives and similar repositories for GraphCS:
Users that are interested in GraphCS are comparing it to the libraries listed below
- single-cell RNA-seq clustering☆10Updated 4 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆29Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆36Updated 2 years ago
- Biological Network Integration using Convolutions☆60Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 4 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆19Updated 6 months ago
- ☆26Updated 2 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆101Updated last year
- ☆17Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆121Updated 2 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆22Updated 3 years ago
- ☆14Updated 3 years ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 4 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆12Updated last year
- "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022☆21Updated last year
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆11Updated 3 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 2 months ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆53Updated 4 years ago
- ☆14Updated 3 years ago
- Deep Generative Modeling of RNA Velocity☆35Updated 2 months ago
- scDCC: Single Cell Deep Constrained Clustering☆41Updated 6 months ago
- ☆73Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- Knowledge-primed neural networks☆35Updated last year
- ☆28Updated 3 months ago