Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
☆15Nov 7, 2024Updated last year
Alternatives and similar repositories for stmut
Users that are interested in stmut are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆34Jun 12, 2019Updated 7 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- ☆13Apr 8, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆28Sep 20, 2023Updated 2 years ago
- ☆51Feb 16, 2022Updated 4 years ago
- Spatial Cellular Estimator for Tumors☆65Jul 30, 2026Updated last week
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- ☆10Jan 22, 2026Updated 6 months ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- ☆14Mar 28, 2025Updated last year
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Updated this week
- ☆11May 12, 2021Updated 5 years ago
- ☆12May 4, 2021Updated 5 years ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 2 months ago
- ☆28Jun 4, 2023Updated 3 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆14Aug 21, 2025Updated 11 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 4 months ago
- ☆12Apr 26, 2020Updated 6 years ago
- Swift Phenotypic Analysis of Cells☆10Jun 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆84Jun 9, 2022Updated 4 years ago
- The package is developed for treatment recommendation & pairwise treatment individual effect estimation (ITE/CATE/HTE) when multiple trea…☆11Mar 9, 2023Updated 3 years ago
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- ☆10Nov 6, 2023Updated 2 years ago
- Cross-attention-based cell-cell interaction inference from ST data.☆22Jul 31, 2026Updated last week
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- ☆12Jun 28, 2024Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆73Apr 12, 2024Updated 2 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Jul 16, 2026Updated 3 weeks ago
- ☆14May 29, 2024Updated 2 years ago
- Software for hybridization capture bait design☆11Jun 12, 2026Updated last month
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago