OscarGVelasco / ClusterFoldSimilarityLinks
Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
☆24Updated 4 months ago
Alternatives and similar repositories for ClusterFoldSimilarity
Users that are interested in ClusterFoldSimilarity are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Functional Inference of Gene Regulation☆46Updated last year
- ☆39Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- ☆32Updated 7 months ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- ☆38Updated 2 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 3 weeks ago
- ☆51Updated last year
- ☆58Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆23Updated last year
- ☆41Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Network construction Algorithm☆22Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week