Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
☆26Feb 2, 2026Updated 5 months ago
Alternatives and similar repositories for ClusterFoldSimilarity
Users that are interested in ClusterFoldSimilarity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34Jul 2, 2026Updated 2 weeks ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆23Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11May 25, 2025Updated last year
- ☆11Jul 8, 2024Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- ☆34May 31, 2026Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 3 years ago
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- Methods for decontamination of single cell data☆65Feb 16, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Accurate and fast cell marker gene identification with COSG☆60Mar 7, 2026Updated 4 months ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Parameter estimation for PDEs☆10Sep 12, 2019Updated 6 years ago
- ☆15May 19, 2022Updated 4 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 months ago
- Spatial Single Cell transcriptomic library☆22Jan 15, 2026Updated 6 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆31May 7, 2026Updated 2 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆12Apr 19, 2023Updated 3 years ago
- Spatial omics in the browser for hundreds of images at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/☆63Updated this week
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- ☆12May 29, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆39May 31, 2026Updated last month
- barcode demultiplexing☆22Jun 4, 2019Updated 7 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆23Feb 4, 2024Updated 2 years ago