Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
☆26Feb 2, 2026Updated last month
Alternatives and similar repositories for ClusterFoldSimilarity
Users that are interested in ClusterFoldSimilarity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆30Feb 2, 2026Updated last month
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- ☆11Jul 8, 2024Updated last year
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Oct 8, 2025Updated 5 months ago
- ☆11May 25, 2025Updated 10 months ago
- Developmental Spatiotemporal Optimal Transport☆13Mar 19, 2025Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 5 years ago
- A public clone of the HypoMap Figure & analysis repository.☆11Sep 26, 2022Updated 3 years ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Mar 16, 2026Updated 2 weeks ago
- Accurate and fast cell marker gene identification with COSG☆58Mar 7, 2026Updated 3 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- Methods for decontamination of single cell data☆61Feb 16, 2025Updated last year
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 2 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago
- barcode demultiplexing☆22Jun 4, 2019Updated 6 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆183Aug 12, 2025Updated 7 months ago
- ☆12May 29, 2024Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆36Nov 28, 2025Updated 4 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Nov 20, 2025Updated 4 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Feb 6, 2026Updated last month
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 2 years ago
- Parameter estimation for PDEs☆10Sep 12, 2019Updated 6 years ago