WeijiaSu / TIR-Learner-RiceLinks
Modified TIR-Learner for Rice genome
☆12Updated 6 years ago
Alternatives and similar repositories for TIR-Learner-Rice
Users that are interested in TIR-Learner-Rice are comparing it to the libraries listed below
Sorting:
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- ☆31Updated 9 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆31Updated 5 years ago
- FastK based version of Merqury☆28Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆28Updated 6 months ago
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 10 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated this week
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆28Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Domain based annotation of transposable elements☆20Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- SV calling for diploid assemblies☆29Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago