Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
☆13Mar 11, 2019Updated 6 years ago
Alternatives and similar repositories for pyTanFinder
Users that are interested in pyTanFinder are comparing it to the libraries listed below
Sorting:
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 4 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated 3 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 9 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 5 months ago
- ☆16Nov 19, 2025Updated 3 months ago
- ☆10Sep 4, 2024Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- FastK based version of Merqury☆32Jan 19, 2026Updated last month
- Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file☆13Feb 2, 2017Updated 9 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- ☆27Feb 19, 2025Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Mar 5, 2025Updated 11 months ago
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- ☆31Apr 7, 2025Updated 10 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- ☆29Feb 5, 2026Updated last month
- FamDB file format library and utilities☆38Aug 27, 2025Updated 6 months ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 10 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago