Kirovez / pyTanFinderLinks
Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
☆13Updated 6 years ago
Alternatives and similar repositories for pyTanFinder
Users that are interested in pyTanFinder are comparing it to the libraries listed below
Sorting:
- ☆31Updated 10 months ago
- ☆32Updated last year
- Centromics: visualing centromeres with multiple omics data☆25Updated 11 months ago
- ☆21Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 8 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 11 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- ☆28Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆21Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 4 months ago
- ☆29Updated 3 years ago
- Domain based annotation of transposable elements☆21Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Updated last year
- ☆29Updated this week
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 3 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago