Kirovez / pyTanFinderLinks
Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
☆12Updated 6 years ago
Alternatives and similar repositories for pyTanFinder
Users that are interested in pyTanFinder are comparing it to the libraries listed below
Sorting:
- ☆27Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- ☆20Updated 9 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 4 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 5 months ago
- ☆16Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆14Updated last month
- ☆29Updated 5 months ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆11Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 6 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆12Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- ☆16Updated 5 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- ☆25Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- ☆27Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago