Kirovez / pyTanFinderLinks
Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
☆12Updated 6 years ago
Alternatives and similar repositories for pyTanFinder
Users that are interested in pyTanFinder are comparing it to the libraries listed below
Sorting:
- ☆27Updated 5 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- ☆21Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆17Updated last year
- ☆30Updated 8 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 6 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated this week
- A genome assembly assessment pipeline.☆37Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 8 months ago
- Domain based annotation of transposable elements☆20Updated 4 months ago
- ☆28Updated 3 years ago
- ☆29Updated last year
- ☆24Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 9 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated 2 weeks ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- ☆19Updated 9 months ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 4 months ago
- ☆16Updated 3 years ago