ialbert / genescape-central

Related projects ⓘ

Alternatives and complementary repositories for genescape-central

• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆35Updated 2 weeks ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 5 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆54Updated 2 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆19Updated 2 weeks ago
• Oshlack / necklace
  Combine reference and assembled transcriptomes for RNA-Seq analysis
  ☆21Updated 4 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆22Updated 2 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆17Updated 2 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆59Updated 4 years ago
• epi2me-labs / wf-amplicon
  ☆19Updated last week
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆21Updated 3 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆11Updated 8 years ago
• lconde-ucl / DGE
  Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
  ☆12Updated 5 months ago
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated 7 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last week
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆14Updated 2 months ago
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆16Updated this week
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 2 years ago
• dvdylus / read2tree
  ☆20Updated 2 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆28Updated 7 months ago
• arendsee / phylostratr
  An R framework for phylostratigraphy
  ☆33Updated last year
• metagenlab / MeSS
  Snakemake pipeline for simulating shotgun metagenomic samples
  ☆18Updated this week
• bergmanlab / ngs_te_mapper2
  Software for detecting transposable element insertions from next-generation sequencing data
  ☆9Updated last year
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆33Updated last year
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year