GonzalezLab / T-lex3
☆14Updated 4 years ago
Alternatives and similar repositories for T-lex3:
Users that are interested in T-lex3 are comparing it to the libraries listed below
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- ☆11Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆10Updated 10 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated 9 months ago
- Genome alignment and synteny plots☆27Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- ☆16Updated 5 years ago
- Segmental duplication detection tool☆13Updated last year
- ☆16Updated 3 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 9 months ago
- The MafFilter genome alignment processor☆17Updated 4 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- SINE annotation tool for plant genomes☆17Updated 11 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 6 months ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 6 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- ☆12Updated 8 months ago
- ☆29Updated last week
- Improved Phased Assembler☆27Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- genomic alignment similarity search tool☆19Updated 7 months ago