GonzalezLab / T-lex3
☆15Updated 4 years ago
Alternatives and similar repositories for T-lex3:
Users that are interested in T-lex3 are comparing it to the libraries listed below
- ☆10Updated 10 years ago
- The MafFilter genome alignment processor☆17Updated 5 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- ☆16Updated 5 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆11Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- Haploidy and Size Completeness Estimation☆13Updated 10 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 4 months ago
- ☆15Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Genome alignment and synteny plots☆28Updated last year
- A long-read SV calling pipeline☆11Updated 3 years ago
- ☆12Updated 9 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 10 months ago
- Visualising discordant reads☆15Updated 9 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- ☆30Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆15Updated 5 months ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago