☆16Jun 12, 2020Updated 6 years ago
Alternatives and similar repositories for T-lex3
Users that are interested in T-lex3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Methods for examining PCA locally along the genome.☆89Aug 13, 2024Updated last year
- Transposable Elements Representation Learner (TERL)☆19Jun 2, 2025Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆26Sep 14, 2020Updated 5 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- ☆18Feb 15, 2024Updated 2 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated last month
- ☆16Oct 9, 2024Updated last year
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 2 months ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 10 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- Extended ComplexHeatmap☆12Jan 5, 2025Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- ☆11Dec 12, 2014Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Population-scale genotyping using pangenome graphs☆199Jan 9, 2025Updated last year
- A set of functions to visualise genotypes based on a VCF☆90Jan 28, 2022Updated 4 years ago
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated 2 years ago
- QTG_Finder, a QTL causal gene prioritization tool☆11Nov 9, 2024Updated last year
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Nov 4, 2021Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆94May 30, 2026Updated 2 weeks ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆20Aug 26, 2019Updated 6 years ago
- SRF: Satellite Repeat Finder☆104Jan 8, 2024Updated 2 years ago