Alternatives and similar repositories for TELR

Users that are interested in TELR are comparing it to the libraries listed below

• johnssproul / RepeatProfiler
  ☆27Updated 11 months ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 6 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆27Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• farhangus / Sniffles2_plot
  ☆33Updated last year
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆54Updated 5 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆58Updated 7 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• sestaton / tephra
  A tool for discovering transposable elements and describing patterns of genome evolution
  ☆31Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 4 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 6 years ago
• baozg / phased-assembly-check
  ☆32Updated last year
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆47Updated 3 years ago
• vollgerlab / NucFreq
  ☆38Updated 4 months ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆45Updated last week
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆50Updated 2 weeks ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆35Updated 6 months ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆38Updated 4 months ago