bergmanlab / TELRLinks
TELR is a fast non-reference transposable element detector from long read sequencing data.
☆34Updated 2 years ago
Alternatives and similar repositories for TELR
Users that are interested in TELR are comparing it to the libraries listed below
Sorting:
- Transposable Elements MOvement detection using LOng reads☆25Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆33Updated 4 years ago
- ☆26Updated 8 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- read and analyse RepeatMasker output☆26Updated 2 years ago
- ☆43Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆31Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- SV genotyper for long reads with a variation graph☆13Updated 2 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆38Updated 3 weeks ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago