owensgl / biol525D

Related projects ⓘ

Alternatives and complementary repositories for biol525D

• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆20Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆12Updated 6 months ago
• lstevison / vcf-conversion-tools
  Tools to convert to and from vcf format
  ☆14Updated 7 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆46Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated last month
• ohdongha / OrthNet
  CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…
  ☆9Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆28Updated last month
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 3 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆22Updated 8 months ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆12Updated 9 months ago
• WeijiaSu / TIR-Learner-Rice
  Modified TIR-Learner for Rice genome
  ☆12Updated 5 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated 11 months ago
• jessicawleigh / popart
  General purpose population genetics software
  ☆12Updated 5 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆67Updated 3 years ago
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆11Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• LauritsSkov / Introgression-detection
  ☆36Updated last month
• tsackton / linked-selection
  ☆24Updated 7 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• daewoooo / SVbyEye
  ☆71Updated last month
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• ruidlpm / pathPhynder
  A workflow for integrating ancient lineages into present-day phylogenies.
  ☆24Updated last month
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆33Updated 11 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated 2 weeks ago
• SIWLab / Lab_Info
  info and docs for the Wright Lab
  ☆14Updated 8 years ago