GenomeThreader gene prediction software.
☆14Nov 10, 2025Updated 3 months ago
Alternatives and similar repositories for genomethreader
Users that are interested in genomethreader are comparing it to the libraries listed below
Sorting:
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Synteny Mapping and Analysis Program☆30Feb 14, 2026Updated 2 weeks ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Mar 31, 2015Updated 10 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆181Dec 16, 2025Updated 2 months ago
- ☆12May 12, 2019Updated 6 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- ☆17Feb 11, 2026Updated 2 weeks ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 3 months ago
- Genomic Annotation Logic and Execution System☆13Apr 22, 2025Updated 10 months ago
- parallelized blat with multi-threads support☆56Jan 23, 2025Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆32Jan 3, 2022Updated 4 years ago
- ViroBLAST standalone package☆16Apr 4, 2024Updated last year
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 6 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 4 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated 11 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- Genome annotation with AUGUSTUS☆328Aug 15, 2025Updated 6 months ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- ☆17Nov 19, 2025Updated 3 months ago
- ☆22Feb 10, 2026Updated 2 weeks ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆15Dec 18, 2025Updated 2 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Jan 14, 2026Updated last month
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Feb 18, 2026Updated last week
- Gene prediction software☆67Oct 22, 2022Updated 3 years ago
- ☆21May 31, 2024Updated last year
- ☆18Nov 21, 2024Updated last year