Alternatives and similar repositories for NUMTs-detection

Users that are interested in NUMTs-detection are comparing it to the libraries listed below

• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 8 months ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆20Updated 2 years ago
• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆22Updated 8 years ago
• campanam / BaitsTools
  Software for hybridization capture bait design
  ☆11Updated last year
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated last year
• AlgoLab / pantas
  Differential quantification of alternative splicing events on spliced pangenome graphs
  ☆14Updated 6 months ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆17Updated 3 months ago
• pinbo / RgeneticMap
  Draw genetic map (linkage map) in R
  ☆12Updated 7 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 4 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last month
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated last week
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 4 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated last month
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 4 years ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆27Updated last week
• LAILAB-CAU / update-Mo17
  ☆27Updated 2 years ago
• bw2 / ExpansionHunter
  This fork of Illumina/ExpansionHunter introduces new features and optimizations
  ☆10Updated 2 months ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• GenisGE / evalAdmix
  ☆14Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆23Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• caulilin / QTG_Seq
  ☆22Updated 6 years ago