Alternatives and similar repositories for NUMTs-detection

Users that are interested in NUMTs-detection are comparing it to the libraries listed below

• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• campanam / BaitsTools
  Software for hybridization capture bait design
  ☆11Updated last year
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated 7 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• QuentinRougemont / LDhat_workflow
  ☆10Updated 10 months ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated last year
• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆25Updated 9 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆21Updated 3 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆41Updated 5 months ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 5 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆36Updated 6 months ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆14Updated 4 years ago
• z0on / tag-based_RNAseq
  Cost-efficient genome-wide gene expression profiling
  ☆16Updated 3 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 9 months ago
• hillerlab / GeneLossPipe
  ☆25Updated 3 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 4 months ago
• AlgoLab / pantas
  Differential quantification of alternative splicing events on spliced pangenome graphs
  ☆14Updated 11 months ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• GenisGE / evalAdmix
  ☆15Updated last year
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago