Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
☆41Dec 11, 2018Updated 7 years ago
Alternatives and similar repositories for MitoSeek
Users that are interested in MitoSeek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A local database infrastructure for analysis of targeted- and whole genome re-sequencing projects☆11Apr 7, 2015Updated 11 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A bioinformatics pipeline to analyze mtDNA from NGS data☆98Mar 5, 2024Updated 2 years ago
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 12 years ago
- Analyze exome data for Mendelian disorders. Still in alpha-testing.☆10Apr 13, 2016Updated 10 years ago
- ARBitR: Assembly Refinement with Barcode-identity-tagged Reads☆10Oct 22, 2020Updated 6 years ago
- ☆25Mar 20, 2024Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Sep 16, 2021Updated 5 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, bi…☆13Dec 21, 2017Updated 8 years ago
- ☆20Mar 6, 2024Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆59Dec 11, 2022Updated 3 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- MITObim - mitochondrial baiting and iterative mapping☆118Dec 29, 2020Updated 5 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Analysis toolkit and programming library for k-mer profiles☆30Mar 11, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆80Feb 28, 2023Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- ☆78Mar 6, 2014Updated 12 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆44Sep 8, 2025Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Sep 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 9 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆76Jun 26, 2023Updated 3 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 10 years ago
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 6 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆150Nov 6, 2024Updated 2 years ago