riverlee / MitoSeekLinks
Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
☆41Updated 6 years ago
Alternatives and similar repositories for MitoSeek
Users that are interested in MitoSeek are comparing it to the libraries listed below
Sorting:
- ☆51Updated 6 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- ☆78Updated 11 years ago
- ☆45Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Evolutionary Transcriptomics with R☆49Updated last week
- Adapters for trimming☆30Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Pipeline for Phylostratigraphy☆13Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆33Updated 10 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago