Alternatives and similar repositories for MitoHPC:

Users that are interested in MitoHPC are comparing it to the libraries listed below

• dpuiu / MitoHPC
  ☆14Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated 4 months ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆35Updated 3 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 2 weeks ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆45Updated 3 weeks ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 5 years ago
• GeneDx / scramble
  ☆39Updated last year
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆47Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated last year
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆36Updated 9 months ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆20Updated 3 weeks ago
• guigolab / sQTLseekeR2
  R package to detect splicing QTLs (sQTLs)
  ☆12Updated last year
• fakedrtom / SVAFotate
  ☆39Updated 7 months ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆25Updated 2 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆21Updated 8 months ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆22Updated last year
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• RahmanTeam / DECoN
  ☆53Updated 2 years ago
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆12Updated 2 years ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago