TravisWheelerLab / ULTRALinks
ULTRA Locates Tandemly Repetitive Areas
☆28Updated last month
Alternatives and similar repositories for ULTRA
Users that are interested in ULTRA are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆30Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- ☆17Updated last year
- Reference bias measuring toolkit☆18Updated 2 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- ☆35Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- ☆21Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- Targeted genotyper for complex polymorphic genes☆20Updated 2 weeks ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆14Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆25Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago