Alternatives and similar repositories for nimpress:

Users that are interested in nimpress are comparing it to the libraries listed below

• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 3 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• CoreArray / PySeqArray
  PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
  ☆14Updated 7 years ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• hwanglab / divine
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Updated 6 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 10 months ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆13Updated this week
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 2 years ago
• tkoomar / VCFdbR
  These scripts reformat a VCF into a SQLite database, with R
  ☆14Updated 3 years ago
• nh13 / fqme
  ☆22Updated 4 months ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last week
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 3 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• andreas-wilm / nimreadfq
  A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser
  ☆15Updated last year
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated 3 months ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• nf-cmgg / structural
  A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…
  ☆20Updated last month
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• kcleal / superintervals
  Fast interval intersection library
  ☆37Updated last month
• SeqOne / clinvcf
  Generate an enhanced VCF files from ClinVar XML Full releases
  ☆13Updated last year
• abs-tudelft / variant-calling-at-scale
  Scalable and High Performance Variant Calling on Cluster Environments
  ☆10Updated 3 years ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 5 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• daihang16 / nubeamdedup
  Removing PCR duplicates for sequencing reads.
  ☆14Updated 4 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 5 months ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago