mpinese / nimpress
Polygenic score calculation from VCF in Nim.
☆15Updated 4 years ago
Alternatives and similar repositories for nimpress:
Users that are interested in nimpress are comparing it to the libraries listed below
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 10 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆20Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- ☆22Updated last month
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- Infer the age of ancestral nodes in a tree sequence.☆19Updated this week
- These scripts reformat a VCF into a SQLite database, with R☆14Updated 3 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Variant call adjudication☆16Updated 7 months ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Removing PCR duplicates for sequencing reads.☆13Updated 4 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated this week
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- reference free variant assembly☆32Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Integrated Variant Caller☆17Updated 6 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago