mpinese / nimpressLinks
Polygenic score calculation from VCF in Nim.
☆15Updated 4 years ago
Alternatives and similar repositories for nimpress
Users that are interested in nimpress are comparing it to the libraries listed below
Sorting:
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Variant call adjudication☆16Updated last year
- Detects human contamination in bam files☆16Updated 5 years ago
- ☆14Updated 5 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Updated 4 years ago
- ☆21Updated 10 months ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Structural variant pipeline☆17Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 2 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 8 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- GBWT-based handle graph☆31Updated this week
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- mreps: software for tandem repeat identification in DNA☆15Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- Luslab nextflow modules☆14Updated 4 years ago