ccbiolab / svpluscnvLinks
Integrative analysis of complex structural variants
☆22Updated 5 years ago
Alternatives and similar repositories for svpluscnv
Users that are interested in svpluscnv are comparing it to the libraries listed below
Sorting:
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- ☆24Updated last year
- ☆51Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- ☆35Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆26Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆23Updated 5 months ago
- Tools for merging Tandem Repeat VCF files☆37Updated 8 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Updated 2 weeks ago
- ☆15Updated last year
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- ☆18Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- ☆20Updated 3 years ago
- CADD-SV – a framework to score the effect of structural variants☆17Updated 3 weeks ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated this week
- ☆11Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago