Integrative analysis of complex structural variants
☆22Sep 7, 2020Updated 5 years ago
Alternatives and similar repositories for svpluscnv
Users that are interested in svpluscnv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 2 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Updated this week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 10 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 11 months ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- structural variant database software☆49Updated this week
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated last month
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- ☆15Jun 6, 2023Updated 3 years ago
- Structural Variant Index☆76Jul 1, 2026Updated 3 weeks ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆14Aug 21, 2025Updated 11 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆99Aug 1, 2024Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- R package containing useful functions for mutational signature analysis☆87Updated this week
- A curated list of resources of machine learning related datasets and open-source models for biomedicine.☆14Jul 8, 2020Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Jun 2, 2026Updated last month
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago