Integrative analysis of complex structural variants
☆22Sep 7, 2020Updated 5 years ago
Alternatives and similar repositories for svpluscnv
Users that are interested in svpluscnv are comparing it to the libraries listed below
Sorting:
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆27Jul 26, 2024Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- Structural Variant Index☆75Dec 13, 2024Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago
- Infer the age of ancestral nodes in a tree sequence.☆24Feb 3, 2026Updated last month
- structural variant database software☆47Feb 16, 2026Updated 2 weeks ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Aug 1, 2024Updated last year
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 5 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- ☆11Jul 13, 2018Updated 7 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago