ccbiolab / svpluscnvLinks
Integrative analysis of complex structural variants
☆22Updated 5 years ago
Alternatives and similar repositories for svpluscnv
Users that are interested in svpluscnv are comparing it to the libraries listed below
Sorting:
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- ☆24Updated 11 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆10Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆23Updated 4 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Enabling differential allele-specific analysis☆11Updated 11 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- ☆18Updated 4 years ago
- CADD-SV – a framework to score the effect of structural variants☆17Updated last week
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- ☆20Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- ☆25Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- End-guided RNA assembler☆15Updated last week
- ☆51Updated 6 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 5 months ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago