ccbiolab / svpluscnvLinks
Integrative analysis of complex structural variants
☆22Updated 4 years ago
Alternatives and similar repositories for svpluscnv
Users that are interested in svpluscnv are comparing it to the libraries listed below
Sorting:
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- ☆23Updated 7 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- ☆9Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- ☆21Updated last week
- ☆18Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated 2 weeks ago
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- Enabling differential allele-specific analysis☆11Updated 7 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆19Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated last week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- ☆15Updated last year
- Filter and prioritize fusion calls☆20Updated 10 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Tools for merging Tandem Repeat VCF files☆32Updated 3 months ago
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year