mitoNGS / MToolBoxLinks
A bioinformatics pipeline to analyze mtDNA from NGS data
☆95Updated last year
Alternatives and similar repositories for MToolBox
Users that are interested in MToolBox are comparing it to the libraries listed below
Sorting:
- BAM Statistics, Feature Counting and Annotation☆150Updated this week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- WisecondorX — An evolved WISECONDOR☆102Updated last month
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated 3 weeks ago
- A tool for profiling long STRs from short reads☆99Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 10 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ☆53Updated 2 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆136Updated 3 weeks ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- Allele-specific alignment sorting☆58Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆46Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- a Medical Genetics Sequence Analysis Pipeline☆84Updated last week