mitoNGS / MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
☆92Updated last year
Alternatives and similar repositories for MToolBox:
Users that are interested in MToolBox are comparing it to the libraries listed below
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- WisecondorX — An evolved WISECONDOR☆96Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 6 months ago
- BAM Statistics, Feature Counting and Annotation☆147Updated last month
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆108Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆141Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Data and information about the Polaris study☆53Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 7 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆96Updated 2 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆129Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆103Updated 11 months ago
- ☆39Updated 11 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- ☆119Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆101Updated 2 weeks ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆141Updated last year
- SV detection from paired end reads mapping☆117Updated 5 years ago
- VCF-kit: Assorted utilities for the variant call format☆129Updated last month
- Phased assembly variant caller☆112Updated 3 months ago