Alternatives and similar repositories for mtGrasp

Users that are interested in mtGrasp are comparing it to the libraries listed below

• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 9 months ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆16Updated last year
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆24Updated 5 months ago
• nf-core / genomeassembler
  Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads
  ☆29Updated 2 weeks ago
• hsigeman / findZX
  ☆23Updated 3 years ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated last week
• PatrickKueck / FASconCAT-G
  FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…
  ☆34Updated last year
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆13Updated last month
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆35Updated 2 years ago
• CAFS-bioinformatics / P_RNA_scaffolder
  use paired-end transcriptome reads to scaffold genomes
  ☆11Updated 6 years ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 11 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆81Updated last year
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 8 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆46Updated 3 months ago
• blackrim / phyutility
  ☆22Updated 11 years ago
• formbio / FLAG
  ☆33Updated last year
• DyogenIBENS / SCORPIOS
  SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
  ☆21Updated last year
• TheBrownLab / PhyloFisher
  PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…
  ☆33Updated 3 months ago
• pedronachtigall / MITGARD
  Mitochondrial Genome Assembly
  ☆16Updated last year
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 8 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago