Automatised pipeline of ConsensuSV workflow.
☆24Aug 23, 2023Updated 3 years ago
Alternatives and similar repositories for ConsensuSV-pipeline
Users that are interested in ConsensuSV-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Sep 4, 2024Updated 2 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 9 months ago
- ☆18Jul 19, 2024Updated 2 years ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆29Mar 13, 2026Updated 7 months ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- pblab: PacBio HiFi analysis tools☆22Oct 21, 2026Updated 2 weeks ago
- ☆14Oct 17, 2024Updated 2 years ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- ☆12Aug 17, 2024Updated 2 years ago
- structural variant database software☆50Updated this week
- The snakemake workflow for whole-exome sequencing analysis and generating vcf files☆11Dec 17, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- De novo tandem repeat calling from PacBio HiFi data☆19Oct 1, 2026Updated last month
- A tool for visualizing alignments of reads in regions containing tandem repeats☆92Apr 20, 2026Updated 6 months ago
- ☆11May 15, 2025Updated last year
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- ☆21May 8, 2026Updated 5 months ago
- ☆12Apr 18, 2022Updated 4 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆31Sep 3, 2026Updated 2 months ago
- ☆24Feb 22, 2023Updated 3 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆37Sep 3, 2026Updated 2 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Svirlpool: structural variant detection from long read sequencing by local assembly☆10Oct 11, 2026Updated 3 weeks ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 6 months ago
- ☆16Apr 2, 2024Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Oct 26, 2026Updated last week
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- v2.x of the microassembly based somatic variant caller☆29Updated this week
- Tumor-only variant calling☆10Apr 16, 2025Updated last year
- GWAS genetics Fine-mapping method☆19Jul 27, 2026Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆31Sep 21, 2024Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated 2 months ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- ☆16Apr 10, 2024Updated 2 years ago