Alternatives and similar repositories for ConsensuSV-pipeline

Users that are interested in ConsensuSV-pipeline are comparing it to the libraries listed below

• cortes-ciriano-lab / ReConPlot
  ☆24Updated 11 months ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• broadinstitute / gnomad-mitochondria
  ☆15Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 9 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 3 weeks ago
• srbehera / DRAGEN_Analysis
  ☆37Updated last year
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 8 months ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 11 months ago
• gagneurlab / splicemap
  ☆23Updated 4 months ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated 8 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated last month
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated 2 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• KolmogorovLab / minda
  ☆25Updated 7 months ago
• Shao-Group / scallop2
  ☆11Updated last month
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated 2 years ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 8 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 3 years ago
• gimelbrantlab / ASEReadCounter_star
  Preprocessing sequencing data for allele-specific analysis
  ☆12Updated 9 months ago
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆12Updated 3 years ago