SFGLab / ConsensuSV-pipeline
Automatised pipeline of ConsensuSV workflow.
☆23Updated last year
Alternatives and similar repositories for ConsensuSV-pipeline:
Users that are interested in ConsensuSV-pipeline are comparing it to the libraries listed below
- ☆21Updated last month
- ☆12Updated 9 months ago
- ☆33Updated last year
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆11Updated 2 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Enabling differential allele-specific analysis☆11Updated 3 weeks ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- An insertion caller for Illumina paired-end WGS data.☆23Updated 5 months ago
- Working space for the GIAB TR benchmarking project☆20Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- alternative splicing analysis pipeline☆18Updated 3 years ago
- ☆10Updated last month
- Immuological gene typing and annotation for genome assembly☆31Updated 2 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 3 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆34Updated 6 months ago
- ☆14Updated this week
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 9 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 4 months ago
- ☆23Updated 3 years ago
- Codes for the Iso-Seq variant-calling paper☆11Updated last year