gatk-workflows / gatk4-mitochondria-pipelineLinks
This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
☆22Updated 5 years ago
Alternatives and similar repositories for gatk4-mitochondria-pipeline
Users that are interested in gatk4-mitochondria-pipeline are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Long read to rMATS☆32Updated 2 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 8 months ago
- ☆51Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- ☆17Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆45Updated 4 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- ☆37Updated 6 years ago
- ☆23Updated 10 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Updated 3 years ago
- ☆25Updated 6 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated last month
- Reconstruction of focal amplifications with long reads☆22Updated last week
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- ☆44Updated last year