This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
☆22Mar 9, 2020Updated 6 years ago
Alternatives and similar repositories for gatk4-mitochondria-pipeline
Users that are interested in gatk4-mitochondria-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 10, 2024Updated 2 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆44Sep 8, 2025Updated last year
- mtDNA Variant Caller☆36Dec 23, 2024Updated last year
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- ☆14Jul 14, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆24Mar 20, 2024Updated 2 years ago
- Mitochondrial Solar Plot☆25Feb 25, 2017Updated 9 years ago
- Fork of ricopili for development of pipeline for family-based data☆20Jun 22, 2025Updated last year
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 4 years ago
- A bioinformatics pipeline to analyze mtDNA from NGS data☆98Mar 5, 2024Updated 2 years ago
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 9 months ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- An efficient genetic data imputation pipeline☆13Jun 14, 2026Updated 2 months ago
- Tests Allelic Expression data for extreme imbalance w.r.t. population☆11Oct 8, 2021Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆32Updated this week
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 10 years ago
- ☆32Dec 6, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- ☆22Jun 12, 2023Updated 3 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 6 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- 🍶 Genome assembly with short sequence reads☆27Jun 4, 2026Updated 3 months ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- ☆11Mar 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 7 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Jun 30, 2026Updated 2 months ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 6 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 6 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆79Feb 28, 2023Updated 3 years ago