Calculate fastq reads and sequencing coverage
☆15Oct 20, 2020Updated 5 years ago
Alternatives and similar repositories for fastq-info
Users that are interested in fastq-info are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- ORF prediction using python☆10Aug 24, 2021Updated 4 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆41Feb 9, 2022Updated 4 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SeqSero2☆40Oct 1, 2025Updated 7 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Jun 22, 2021Updated 4 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 10 months ago
- Desktop tool for microbial genome annotation and gene detection☆13Jun 22, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Sep 25, 2024Updated last year
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 8 months ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Nov 9, 2022Updated 3 years ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆45May 20, 2026Updated last week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆66Sep 14, 2024Updated last year
- ☆16Apr 11, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Apr 16, 2026Updated last month
- ☆16Apr 10, 2024Updated 2 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- ☆22Mar 19, 2025Updated last year
- Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.☆16Jan 4, 2023Updated 3 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago