stephenturner / msigdfLinks
Molecular Signatures Database (MSigDB) in a data frame
☆16Updated 6 years ago
Alternatives and similar repositories for msigdf
Users that are interested in msigdf are comparing it to the libraries listed below
Sorting:
- Gene-level general linear mixed model☆23Updated last week
- ☆10Updated 6 years ago
- ☆10Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Code for EpiMap data browser☆14Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 5 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- HOT regions paper☆11Updated 6 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 9 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 10 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Read HOMER motif analysis output in R.☆17Updated 7 years ago
- R package☆22Updated last year
- BioCarta pathway images☆11Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆12Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago