stephenturner / msigdfLinks
Molecular Signatures Database (MSigDB) in a data frame
☆16Updated 7 years ago
Alternatives and similar repositories for msigdf
Users that are interested in msigdf are comparing it to the libraries listed below
Sorting:
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- HOT regions paper☆11Updated 6 years ago
- ☆10Updated 2 years ago
- Gene-level general linear mixed model☆23Updated 2 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 weeks ago
- ☆10Updated 6 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- ☆12Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated last week
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 4 years ago
- BioCarta pathway images☆11Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 7 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 5 years ago
- Code for EpiMap data browser☆14Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- Python function for TMB snake plots☆16Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- ☆25Updated 6 months ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago