Molecular Signatures Database (MSigDB) in a data frame
☆16Dec 3, 2018Updated 7 years ago
Alternatives and similar repositories for msigdf
Users that are interested in msigdf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 7 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 10 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a tidy data frame☆26Feb 2, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆13Dec 19, 2018Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Nov 17, 2025Updated 4 months ago
- R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes☆13Mar 23, 2016Updated 10 years ago
- ☆10Apr 30, 2019Updated 6 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- HOT regions paper☆11Jun 18, 2019Updated 6 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆17Aug 12, 2022Updated 3 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Mar 6, 2017Updated 9 years ago
- Code repository for TCAT analyses☆13Sep 26, 2025Updated 6 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- ☆15Jul 25, 2025Updated 8 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Jul 24, 2017Updated 8 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- ☆17Jul 19, 2024Updated last year
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 7 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- Machine learning in R☆33Nov 15, 2024Updated last year
- for those times you want to make plots with candy-themed color schemes☆59Mar 30, 2020Updated 5 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆15Jan 14, 2018Updated 8 years ago
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Mar 20, 2023Updated 3 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 3 years ago
- Source of the Open Climate Fix website.☆18Mar 8, 2023Updated 3 years ago
- Plugin for the quantitative analysis of immunohistochemistry samples☆11Jul 29, 2017Updated 8 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- Data science in R notes☆15Apr 28, 2025Updated 10 months ago