Nealelab / picopiliLinks
Fork of ricopili for development of pipeline for family-based data
☆18Updated 3 weeks ago
Alternatives and similar repositories for picopili
Users that are interested in picopili are comparing it to the libraries listed below
Sorting:
- ☆40Updated 7 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Burden testing against public controls☆50Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 7 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- ☆24Updated 7 months ago
- A tool to plot significant regions of GWAS☆30Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Main ricopili repo for public releases☆48Updated 3 months ago
- ☆60Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- ☆26Updated last month
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆65Updated 3 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- Genetic maps interpolated to sites in the 1000 Genomes project☆49Updated 10 years ago
- ☆21Updated last week
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆25Updated 7 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆36Updated 5 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆30Updated 7 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ☆20Updated 2 years ago