Nealelab / picopiliView external linksLinks
Fork of ricopili for development of pipeline for family-based data
☆19Jun 22, 2025Updated 7 months ago
Alternatives and similar repositories for picopili
Users that are interested in picopili are comparing it to the libraries listed below
Sorting:
- Services and guidelines for normalizing drug and other therapy terms☆13Jan 13, 2026Updated last month
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 5 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Main ricopili repo for public releases☆51Apr 8, 2025Updated 10 months ago
- Script used to identify de novo variants from sequencing data.☆11Mar 2, 2017Updated 8 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 2 years ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- ☆14Oct 29, 2025Updated 3 months ago
- Exploring intrinsic gradients of the AHBA☆16Jan 23, 2025Updated last year
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in larg…☆18Aug 15, 2023Updated 2 years ago
- ☆15Apr 10, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Scripts for working with Google Cloud Dataproc service☆37Jun 19, 2019Updated 6 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆20Mar 5, 2024Updated last year
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 3 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated last year
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 2 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆19Aug 6, 2025Updated 6 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Jan 28, 2024Updated 2 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Development for SAIGE and SAIGE-GENE(+)☆89Feb 2, 2026Updated last week
- ☆49Jul 9, 2025Updated 7 months ago
- ☆81Nov 30, 2018Updated 7 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- ☆25Apr 29, 2018Updated 7 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated 2 weeks ago
- ☆11Jul 3, 2022Updated 3 years ago
- SARS-CoV-2 genome from Nigeria☆18Dec 21, 2020Updated 5 years ago
- Course content for HGEN-612☆13Jan 28, 2026Updated 2 weeks ago
- Infer the age of ancestral nodes in a tree sequence.☆24Feb 3, 2026Updated last week
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated last year