Alternatives and similar repositories for picopili:

Users that are interested in picopili are comparing it to the libraries listed below

• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated last year
• statgen / topmed_variant_calling
  ☆23Updated last month
• freeseek / gwaspipeline
  ☆40Updated 6 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 10 months ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 5 years ago
• zhouhufeng / FAVORannotator
  ☆20Updated last year
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆33Updated 7 years ago
• talkowski-lab / SV-Adjudicator
  ☆25Updated 6 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆43Updated this week
• PharmGKB / PGxPOP
  PGxPOP
  ☆16Updated last year
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆49Updated 5 years ago
• CshlSiepelLab / LINSIGHT
  ☆24Updated 7 months ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆41Updated last month
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• UW-GAC / analysis_pipeline
  TOPMed analysis pipeline
  ☆52Updated last year
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆17Updated 8 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated last month
• Phillip-a-richmond / AnnotateVariants
  This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …
  ☆17Updated last year
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆30Updated last month
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆43Updated last year
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆12Updated 7 years ago
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆22Updated last week
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• IARCbioinfo / gatk4-GenotypeGVCFs-nf
  Joint calling of gVCF, following GATK4 Best Practices
  ☆12Updated 5 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆61Updated last year
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆21Updated 5 months ago
• atgu / hgdp_tgp
  ☆36Updated 3 months ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 7 years ago