dpuiu / MitoHPC
☆12Updated 10 months ago
Alternatives and similar repositories for MitoHPC:
Users that are interested in MitoHPC are comparing it to the libraries listed below
- ☆20Updated 9 months ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ☆21Updated last month
- ☆39Updated 4 months ago
- A tool to plot significant regions of GWAS☆29Updated last year
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆21Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆33Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 3 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 2 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 years ago
- Structural variant merging tool☆49Updated 4 months ago
- Fast and scalable variant annotation tool☆30Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆12Updated 6 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆26Updated last month
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- tutorial on pggb☆28Updated this week
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆28Updated last month
- ☆12Updated 8 months ago
- BSMN common data processing pipeline☆12Updated 2 years ago
- Burden testing against public controls☆50Updated 10 months ago
- ☆24Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago