Phylogenomics from Low-coverage Whole-genome Sequencing
☆39Aug 21, 2020Updated 5 years ago
Alternatives and similar repositories for PLWS
Users that are interested in PLWS are comparing it to the libraries listed below
Sorting:
- ☆17Oct 21, 2024Updated last year
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Oct 12, 2025Updated 4 months ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Jan 7, 2026Updated last month
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 10 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- Minia is a short-read assembler based on a de Bruijn graph☆78Dec 27, 2024Updated last year
- ☆23May 26, 2023Updated 2 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆53Aug 27, 2025Updated 6 months ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Oct 8, 2021Updated 4 years ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated 11 months ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Software for hybridization capture bait design☆11Mar 20, 2024Updated last year
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆10Feb 21, 2018Updated 8 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- MitoDNA extending assembler from NGS data☆22Aug 21, 2025Updated 6 months ago
- ☆29Apr 16, 2023Updated 2 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 8 months ago
- ☆11Dec 15, 2025Updated 2 months ago
- ☆76Apr 23, 2020Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆113Sep 2, 2025Updated 6 months ago