CAFS-bioinformatics / P_RNA_scaffolderLinks
use paired-end transcriptome reads to scaffold genomes
☆11Updated 6 years ago
Alternatives and similar repositories for P_RNA_scaffolder
Users that are interested in P_RNA_scaffolder are comparing it to the libraries listed below
Sorting:
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- ☆22Updated 11 years ago
- ☆32Updated 4 years ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- ContScout sequence contamination filter tool☆20Updated last month
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆26Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Automatic evaluation of HGTs☆30Updated 5 months ago
- Visualising discordant reads☆15Updated 9 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- FastK based version of Merqury☆26Updated last month
- Robust identification of orthologous Synteny with the Orthology Index☆23Updated this week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆25Updated 10 months ago
- ☆32Updated last year