CAFS-bioinformatics / P_RNA_scaffolder
use paired-end transcriptome reads to scaffold genomes
☆10Updated 5 years ago
Alternatives and similar repositories for P_RNA_scaffolder:
Users that are interested in P_RNA_scaffolder are comparing it to the libraries listed below
- ☆26Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 4 months ago
- assembly evaluation tool☆34Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated last month
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Genome alignment and synteny plots☆27Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- ☆24Updated 8 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Diploid genome assembly analysis tools☆14Updated 4 months ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- ☆32Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Domain based annotation of transposable elements☆19Updated this week
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Haploidy and Size Completeness Estimation☆13Updated 9 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- Taxon-aware analysis of clustered protein sequences☆30Updated 6 months ago