CAFS-bioinformatics / P_RNA_scaffolder
use paired-end transcriptome reads to scaffold genomes
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for P_RNA_scaffolder
- Visualising discordant reads☆15Updated 9 years ago
- ☆26Updated 3 years ago
- ☆24Updated 8 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- genomic alignment similarity search tool☆19Updated 5 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- ☆19Updated 3 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆19Updated 4 years ago
- ☆32Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆13Updated 3 years ago