Best practices and workflow for genome annotation
☆78Apr 14, 2025Updated last year
Alternatives and similar repositories for GenomeAnnotation
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated 5 months ago
- Genome annotation pipeline☆66Jun 25, 2024Updated 2 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆94Updated this week
- source code for EVM☆126Nov 29, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆208Nov 23, 2025Updated 7 months ago
- ☆189May 22, 2025Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 3 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tutorials on evolutionary genomics☆47Mar 11, 2022Updated 4 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- ☆33Jul 9, 2024Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- circos pipeline☆20May 8, 2021Updated 5 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- General tools for genomic analyses.☆392Mar 25, 2026Updated 3 months ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆74Jun 27, 2026Updated 3 weeks ago
- ☆15Nov 25, 2019Updated 6 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆202Apr 27, 2026Updated 2 months ago