harvardinformatics / GenomeAnnotationLinks
Best practices and workflow for genome annotation
☆78Updated 5 months ago
Alternatives and similar repositories for GenomeAnnotation
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below
Sorting:
- FastOMA is a scalable software package to infer orthology relationship.☆82Updated 2 weeks ago
- Synteny Imager☆64Updated last month
- source code for EVM☆117Updated 9 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- PacBio BAM toolkit☆46Updated 6 months ago
- A list of software for pangenomics☆128Updated 2 weeks ago
- paml documentation and tutorials☆61Updated 4 months ago
- A program for detection of tRNA genes☆67Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated 2 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆57Updated last week
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆89Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated 2 weeks ago
- List of genome assembly tools☆76Updated 2 weeks ago
- This is the standalone version of the EviAnn pipeline☆117Updated 2 weeks ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆85Updated last year
- NLR-Annotator upload☆71Updated 2 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- Application of pan-genome for population☆109Updated 11 months ago
- Workflow for Building Microsynteny Networks☆57Updated 3 years ago
- Neural network classification of TE☆95Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆92Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆77Updated 11 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- SRF: Satellite Repeat Finder☆97Updated last year
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated last week
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year