Best practices and workflow for genome annotation
☆80Apr 14, 2025Updated last year
Alternatives and similar repositories for GenomeAnnotation
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated last month
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆47Jan 28, 2026Updated 9 months ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genome annotation pipeline☆67Jun 25, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆212Nov 23, 2025Updated 11 months ago
- source code for EVM☆130Sep 22, 2026Updated last month
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆96Oct 20, 2026Updated last week
- ☆190May 22, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- ☆11Oct 23, 2024Updated 2 years ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- ☆33Jul 9, 2024Updated 2 years ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 7 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 4 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- ☆33Oct 21, 2026Updated last week
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆116Jan 30, 2026Updated 8 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 10 months ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆69Dec 8, 2025Updated 10 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Oct 20, 2026Updated last week
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago
- ☆42May 19, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- Portable solution to generate genome alignment chains using lastz☆74Updated this week
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated 2 weeks ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- General tools for genomic analyses.☆398Mar 25, 2026Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆213Sep 28, 2026Updated last month