harvardinformatics / GenomeAnnotation
Best practices and workflow for genome annotation
☆75Updated last month
Alternatives and similar repositories for GenomeAnnotation:
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below
- Synteny Imager☆61Updated 7 months ago
- source code for EVM☆109Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆50Updated this week
- PacBio BAM toolkit☆42Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- NLR-Annotator upload☆65Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆74Updated 5 months ago
- Neural network classification of TE☆87Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆90Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆94Updated 2 months ago
- A list of software for pangenomics☆108Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- ☆61Updated 3 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆99Updated last month
- perSVade: personalized Structural Variation detection☆39Updated last month
- Workflow for Building Microsynteny Networks☆53Updated 2 years ago
- ☆71Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated 2 weeks ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆84Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆101Updated last year
- A program for assessing the T2T genome continuity☆69Updated last month
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆64Updated 6 months ago
- NLR annotation tool☆25Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆74Updated last week
- List of genome assembly tools☆64Updated last week