harvardinformatics / GenomeAnnotation
Best practices and workflow for genome annotation
☆73Updated last week
Alternatives and similar repositories for GenomeAnnotation:
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below
- Synteny Imager☆60Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- source code for EVM☆105Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆95Updated last month
- List of genome assembly tools☆54Updated 2 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆93Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- NLR-Annotator upload☆62Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆58Updated 3 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆63Updated last week
- Algorithm For Gene Order Reconstruction in Ancestors☆72Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆106Updated last week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆95Updated last year
- ☆26Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated 3 weeks ago
- convert various features into a GFF-like file for use in genome browsers☆69Updated last year
- Interactive quality assessment of genome assemblies☆91Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- Reference-free profiling of polyploid genomes☆111Updated 6 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- Analysis of convergence between organismal traits and DNA/protein sequences☆47Updated 6 months ago
- Dfam Transposable Element Tools Docker container.☆87Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- Neural network classification of TE☆87Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆110Updated last year
- ☆74Updated 3 months ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 2 years ago
- A organelle de novo genome assembly toolkit☆51Updated last month