alexisvdb / rnaseq_coexpression
Code for RNA-seq gene coexpression analysis
☆9Updated 3 years ago
Alternatives and similar repositories for rnaseq_coexpression:
Users that are interested in rnaseq_coexpression are comparing it to the libraries listed below
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated last year
- Trans-association between HLA and TCR-CDR3☆15Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- Code for EpiMap data browser☆14Updated 8 months ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 2 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆21Updated 7 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 4 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 4 months ago
- ☆20Updated last week
- Workflow for Sequenza, cellularity and ploidy☆19Updated 8 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Bedfile perturbation tool☆17Updated last year
- ☆16Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- ☆13Updated 6 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago