Misassembly Identifier
☆18May 8, 2026Updated last week
Alternatives and similar repositories for NucFlag
Users that are interested in NucFlag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluating genome assemblies☆121Mar 3, 2026Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 4 months ago
- Model and predict short DNA sequence features with neural networks☆80Jun 16, 2019Updated 6 years ago
- Resources for the Col-CEN reference genome assemblies☆11Feb 15, 2022Updated 4 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Centromere mapping and annotation pipeline☆25May 1, 2026Updated 2 weeks ago
- ☆48Apr 27, 2026Updated 3 weeks ago
- ☆41Oct 6, 2025Updated 7 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- ANI based satellite annotation☆26Mar 2, 2026Updated 2 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 10 months ago
- Draw a dot plot from a paf alignment☆42May 9, 2026Updated last week
- A multiscale pangenome browser☆30Apr 24, 2026Updated 3 weeks ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Evaluation and polishing workflows for T2T genome assemblies☆153Apr 17, 2026Updated last month
- Multiple sequence alignment of long tandem repeats☆27May 12, 2026Updated last week
- A bioinformatics toolset for multiomic analysis☆21May 11, 2026Updated last week
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 9 months ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 4 months ago
- Targeted genotyper for complex polymorphic genes☆41May 12, 2026Updated last week
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- ☆125Apr 30, 2026Updated 2 weeks ago
- Pangenome Mutation-Annotated Networks☆43Apr 9, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆51Apr 1, 2026Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆64Apr 17, 2026Updated last month
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 4 months ago
- Yet Another CWL Engine by Golang☆18Mar 19, 2019Updated 7 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆11Feb 21, 2018Updated 8 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 10 months ago
- ☆42Dec 29, 2025Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆87Dec 3, 2025Updated 5 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆251Apr 13, 2026Updated last month
- Genome Pair Rapid Dotter☆68Sep 2, 2021Updated 4 years ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- A FUSE interface to the NCBI Sequence Read Archive (SRA)☆31Jan 29, 2020Updated 6 years ago