Vizgen / vizgen-postprocessingLinks
The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
☆29Updated 11 months ago
Alternatives and similar repositories for vizgen-postprocessing
Users that are interested in vizgen-postprocessing are comparing it to the libraries listed below
Sorting:
- ☆68Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- ☆27Updated 10 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Spatial analysis of FISH data☆31Updated 3 months ago
- ☆28Updated 10 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 2 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆35Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆54Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 4 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 3 years ago
- ☆38Updated last year
- ☆15Updated 3 years ago
- ☆20Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 3 weeks ago
- Segmentation error aware clustering for multiplexed imaging☆18Updated 7 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Identification of spatial homogeneous regions☆21Updated 7 months ago
- ☆36Updated 3 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆29Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 2 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆17Updated 2 months ago