Vizgen / vizgen-postprocessingLinks
The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
☆35Updated last year
Alternatives and similar repositories for vizgen-postprocessing
Users that are interested in vizgen-postprocessing are comparing it to the libraries listed below
Sorting:
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Spatial analysis of FISH data☆34Updated 8 months ago
- ☆88Updated this week
- Spatial Single-Cell Analysis Toolkit☆108Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- ☆27Updated last year
- ☆15Updated 3 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 3 months ago
- ☆44Updated 3 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆84Updated 2 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Updated 11 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆25Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 3 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Updated 10 months ago
- comseg☆24Updated last year
- ☆24Updated last week
- ☆59Updated last month
- Interactive visualization of spatial omics data☆75Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ☆29Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Updated 4 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- Python package for reading imaging mass cytometry (IMC) files☆18Updated 2 weeks ago