Vizgen / vizgen-postprocessingLinks
The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
☆35Updated last year
Alternatives and similar repositories for vizgen-postprocessing
Users that are interested in vizgen-postprocessing are comparing it to the libraries listed below
Sorting:
- ☆86Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆49Updated this week
- Spatial analysis of FISH data☆34Updated 7 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated last month
- Spatial Single-Cell Analysis Toolkit☆106Updated last week
- Interactive visualization of spatial omics data☆73Updated last week
- ☆27Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 7 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆82Updated last month
- ☆15Updated 3 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- ☆42Updated 2 months ago
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆256Updated 3 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated 3 weeks ago
- comseg☆24Updated 11 months ago
- ☆29Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆24Updated this week
- ☆24Updated last month
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ☆40Updated this week
- Python package for reading imaging mass cytometry (IMC) files☆18Updated 3 weeks ago
- Integrated pipeline for multiplexed image analysis☆101Updated last week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Updated 7 months ago