Vizgen / vizgen-postprocessingLinks
The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
☆33Updated last year
Alternatives and similar repositories for vizgen-postprocessing
Users that are interested in vizgen-postprocessing are comparing it to the libraries listed below
Sorting:
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- ☆73Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- ☆27Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated this week
- Spatial analysis of FISH data☆32Updated 5 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆77Updated 2 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- ☆38Updated 2 months ago
- comseg☆24Updated 8 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- Python package for reading imaging mass cytometry (IMC) files☆16Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- A toolkit for processing multiplexed tissue images☆65Updated last week
- ☆15Updated 3 years ago
- ☆52Updated 4 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆238Updated this week
- ☆22Updated this week
- Interactive visualization of spatial omics data☆70Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated this week