multiFISH / EASI-FISHLinks
Tools and scripts for EASI-FISH image data analysis
☆17Updated 3 years ago
Alternatives and similar repositories for EASI-FISH
Users that are interested in EASI-FISH are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 2 weeks ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆54Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated this week
- Interactive visualization of spatial omics data☆70Updated last week
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- QuPath extension to interactively align images☆25Updated 2 months ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆98Updated 7 months ago
- Accurate and efficient spot detection for microscopy data☆106Updated 2 weeks ago
- ☆74Updated this week
- Raw format to OME-TIFF converter☆56Updated last month
- ABBA, controlled from python☆15Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated last week
- A relabeling tool for tiled segmentation with Dask☆16Updated last year
- Tools for distributed alignment of massive images☆87Updated last month
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- The official QuPath extension for InstanSeg☆27Updated last week
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago