Tools and scripts for EASI-FISH image data analysis
☆17Jul 24, 2026Updated last month
Alternatives and similar repositories for EASI-FISH
Users that are interested in EASI-FISH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated 4 months ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- Tools for distributed alignment of massive images☆95Updated this week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆51Aug 1, 2021Updated 5 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆54Feb 4, 2025Updated last year
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- ☆14Jan 16, 2019Updated 7 years ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- ☆50Mar 1, 2018Updated 8 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆14Sep 25, 2025Updated 11 months ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Generate HCR-style Probe Pairs for mRNA visualization☆49Sep 19, 2023Updated 2 years ago
- Multiscale Image Restoration for fluorescence microscopy☆10Jun 17, 2023Updated 3 years ago
- Running compute-intense parts of BigStitcher distributed☆31Aug 11, 2026Updated 2 weeks ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- MERFISH decoding software☆29Aug 16, 2025Updated last year
- Evaluation of the segmented vascular structures of the retina of our eye obtained through fundus photography using Machine learning techn…☆11Oct 2, 2024Updated last year
- Automated Model Inference from Neural Dynamics☆17Sep 10, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deploy Dask on Marathon☆10Feb 6, 2017Updated 9 years ago
- ☆17Feb 23, 2024Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago
- Library to parse and process Nanoscope Dimension AFM files.☆10Jan 6, 2019Updated 7 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆64Jul 1, 2023Updated 3 years ago
- Run TFLITE models on the web☆13Jan 2, 2022Updated 4 years ago
- Sparse reduced-rank regression☆20Jan 8, 2025Updated last year
- Docker image for MySQL configured to work with DataJoint☆18Sep 3, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single Cell Cluster Evaluation☆101Jul 28, 2021Updated 5 years ago
- ImageJ convenience layer for N5☆21Jun 29, 2026Updated 2 months ago
- UKRIN Kidney Analysis Toolbox☆14Mar 27, 2025Updated last year
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆21Aug 3, 2026Updated 3 weeks ago
- Allen Institute mouse eye tracker.☆13Sep 7, 2018Updated 7 years ago
- This repository contains code used for the fly brain activity experiments☆18Apr 26, 2023Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆41Apr 30, 2026Updated 4 months ago