multiFISH / EASI-FISH
Tools and scripts for EASI-FISH image data analysis
☆17Updated 2 years ago
Alternatives and similar repositories for EASI-FISH:
Users that are interested in EASI-FISH are comparing it to the libraries listed below
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 4 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆18Updated 2 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last month
- Image registration (alignment) software for large microscopy images☆24Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- ☆68Updated 3 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- MethodsJ2☆14Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- Deep Learning Library for Spot Detection☆15Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- Tools for distributed alignment of massive images☆81Updated last month
- Interactive visualization of spatial omics data☆51Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated last month
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- Framework for image and flow cytometry analysis☆24Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- A relabeling tool for tiled segmentation with Dask☆15Updated 5 months ago
- The 2023 version of cellPLATO☆14Updated 4 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 3 weeks ago
- ☆30Updated last year