Python program to generate NetworkX graphs from segmented images.
☆14Apr 14, 2023Updated 2 years ago
Alternatives and similar repositories for Griottes
Users that are interested in Griottes are comparing it to the libraries listed below
Sorting:
- ☆15Jul 29, 2022Updated 3 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Apr 25, 2025Updated 10 months ago
- napari widgets for start-to-finish batch processing☆15Mar 1, 2026Updated 2 weeks ago
- ☆21Mar 13, 2024Updated 2 years ago
- Microsnoop: A generalist tool for microscopy image representation☆11Feb 27, 2025Updated last year
- ☆23Mar 26, 2021Updated 4 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated last month
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 8 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Jan 24, 2022Updated 4 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 9 months ago
- Implementation of self-organizing maps in Python 3.☆10Jan 14, 2025Updated last year
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated last month
- Command-line client for Fractal☆48Mar 12, 2026Updated last week
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Web Image Processing Pipeline (WIPP)☆26Dec 19, 2025Updated 3 months ago
- Framework for image and flow cytometry analysis☆33Jan 3, 2026Updated 2 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 3 years ago
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated last year
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- Python package that uses colorspace-based segmentation to analyze histopathology images.☆13Feb 7, 2024Updated 2 years ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 2 years ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- GPU-accelerated Image Processing library for Python☆54Mar 13, 2026Updated last week
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 2 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Mar 5, 2026Updated 2 weeks ago
- ☆13Apr 27, 2020Updated 5 years ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year