Python program to generate NetworkX graphs from segmented images.
☆14Apr 14, 2023Updated 3 years ago
Alternatives and similar repositories for Griottes
Users that are interested in Griottes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jul 29, 2022Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 5 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- ☆22Mar 13, 2024Updated 2 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- A fully scalable robust image feature extraction library.☆29Updated this week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 6 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 2 months ago
- Microsnoop: A generalist tool for microscopy image representation☆13Feb 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆20Aug 19, 2026Updated last week
- Command-line client for Fractal☆49Updated this week
- Implementation of self-organizing maps in Python 3.☆10Aug 5, 2026Updated 3 weeks ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 4 years ago
- Python package that uses colorspace-based segmentation to analyze histopathology images.☆13Feb 7, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 8 months ago
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A self-supervised denoising algorithm.☆30Apr 6, 2024Updated 2 years ago
- ☆13Apr 27, 2020Updated 6 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 5 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated 2 years ago
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Updated this week
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A graphical user interface (GUI) for PIMS☆12Aug 12, 2020Updated 6 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Jun 16, 2026Updated 2 months ago
- Denoising via adaptive binning.☆14Updated this week