emanuega / MERlinLinks
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
☆35Updated 4 years ago
Alternatives and similar repositories for MERlin
Users that are interested in MERlin are comparing it to the libraries listed below
Sorting:
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Spatial analysis of FISH data☆34Updated 7 months ago
- ☆29Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- ☆86Updated last week
- Interactive visualization of spatial omics data☆73Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- Python API and Jupyter widget for Vitessce☆60Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆85Updated last month
- A plugin to visualise 3D spatial single cell omics☆20Updated 2 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 11 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 6 months ago
- ☆27Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 7 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 2 months ago
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- Spatial Single-Cell Analysis Toolkit☆106Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- ☆14Updated 2 months ago
- MERFISH decoding software☆26Updated 4 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆24Updated 2 weeks ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆25Updated this week
- Toolbox for the analysis of smFISH images.☆71Updated 2 years ago
- ☆15Updated 3 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated 3 weeks ago