emanuega / MERlinLinks
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
☆35Updated 4 years ago
Alternatives and similar repositories for MERlin
Users that are interested in MERlin are comparing it to the libraries listed below
Sorting:
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Spatial analysis of FISH data☆34Updated 8 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 2 months ago
- ☆29Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 7 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆88Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Interactive visualization of spatial omics data☆74Updated last week
- ☆27Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆103Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Python API and Jupyter widget for Vitessce☆60Updated this week
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆30Updated 8 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 11 months ago
- ☆15Updated 3 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 5 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- comseg☆24Updated 11 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- ☆14Updated 3 weeks ago
- A plugin to visualise 3D spatial single cell omics☆20Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆25Updated this week
- A pipeline to transform images into valuable analysis items☆17Updated 7 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year