emanuega / MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
☆35Updated 3 years ago
Alternatives and similar repositories for MERlin:
Users that are interested in MERlin are comparing it to the libraries listed below
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 4 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 6 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last month
- ☆29Updated 10 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- The 2023 version of cellPLATO☆14Updated 4 months ago
- Analysis of smFISH data☆11Updated 6 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆18Updated 2 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 11 months ago
- Interactive visualization of spatial omics data☆51Updated this week
- Image registration (alignment) software for large microscopy images☆24Updated last year
- ☆27Updated 5 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆44Updated 8 months ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆76Updated 3 weeks ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- Repository for storing prototype functionality implementations for the BKP☆23Updated last week
- MERFISH decoding software☆26Updated last year
- Spatial analysis of FISH data☆29Updated 9 months ago
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- ☆52Updated 2 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆25Updated 5 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month