saeyslab / harpyLinks
Single-cell spatial proteomics analysis that makes you happy!
☆38Updated this week
Alternatives and similar repositories for harpy
Users that are interested in harpy are comparing it to the libraries listed below
Sorting:
- ☆72Updated this week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 5 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- ☆49Updated 3 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆76Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 7 months ago
- ☆59Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆85Updated last week
- Static plotting for spatialdata☆67Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- comseg☆24Updated 7 months ago
- ☆51Updated 4 months ago
- ☆62Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆54Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆29Updated 2 months ago
- ☆27Updated 11 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆129Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆37Updated 2 months ago
- A toolkit for processing multiplexed tissue images☆64Updated last week
- ☆39Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 2 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 4 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆137Updated last week