Tools for distributed alignment of massive images
☆93Mar 9, 2026Updated last week
Alternatives and similar repositories for bigstream
Users that are interested in bigstream are comparing it to the libraries listed below
Sorting:
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Nov 18, 2024Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Dec 11, 2025Updated 3 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Updated this week
- ☆13Feb 27, 2024Updated 2 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Running compute-intense parts of BigStitcher distributed☆30Mar 4, 2026Updated 2 weeks ago
- ☆14Jan 25, 2024Updated 2 years ago
- 3D/4D volumetric rendering of microscopy data☆27Nov 10, 2025Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Streaming directly to Zarr on the file system or S3☆29Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆67Mar 13, 2026Updated last week
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆37Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆46Mar 12, 2026Updated last week
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆107Mar 9, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆91Mar 2, 2026Updated 2 weeks ago
- GPU-based 3D non-rigid volumetric registration☆47Aug 26, 2025Updated 6 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- A napari plugin for making animations☆95Feb 1, 2026Updated last month
- ImageJ convenience layer for N5☆19Mar 12, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ☆112Feb 19, 2026Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- pipeline for volumetric cell segmentation☆14Feb 12, 2026Updated last month
- ☆41Mar 12, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆226Mar 11, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 7 months ago