JaneliaSciComp / bigstreamLinks
Tools for distributed alignment of massive images
☆89Updated last month
Alternatives and similar repositories for bigstream
Users that are interested in bigstream are comparing it to the libraries listed below
Sorting:
- StarDist plugin for napari☆39Updated last year
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- ☆37Updated 2 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- ☆45Updated 5 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated last month
- ☆51Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated last week
- ☆18Updated 3 years ago
- Cookiecutter for napari plugins☆72Updated last year
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 6 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 2 weeks ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- ☆12Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- ☆36Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Particle tracking by solving linear assignment problem.☆60Updated 2 weeks ago