JaneliaSciComp / bigstreamLinks
Tools for distributed alignment of massive images
☆92Updated this week
Alternatives and similar repositories for bigstream
Users that are interested in bigstream are comparing it to the libraries listed below
Sorting:
- StarDist plugin for napari☆38Updated last year
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- ☆38Updated 2 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- ☆49Updated last month
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- ☆22Updated 7 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 2 weeks ago
- Read and write ImageJ ROI format.☆84Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated this week
- ☆46Updated 5 years ago
- Cookiecutter for napari plugins☆71Updated last year
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago