chenhcs / SCSLinks
Sub-cellular spatial transcriptomics Cell Segmentation
☆68Updated 2 years ago
Alternatives and similar repositories for SCS
Users that are interested in SCS are comparing it to the libraries listed below
Sorting:
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- ☆52Updated 4 years ago
- ☆142Updated 9 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆54Updated this week
- comseg☆24Updated 7 months ago
- ☆35Updated last week
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- ☆39Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 7 months ago
- ☆51Updated 4 months ago
- ☆59Updated this week
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆67Updated last year
- A toolkit for processing multiplexed tissue images☆64Updated last week
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆61Updated last year
- ☆37Updated 2 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆84Updated last year
- data for spacejam2☆18Updated 3 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆67Updated 11 months ago
- ☆62Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 7 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week