chenhcs / SCSLinks
Sub-cellular spatial transcriptomics Cell Segmentation
☆68Updated 2 years ago
Alternatives and similar repositories for SCS
Users that are interested in SCS are comparing it to the libraries listed below
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- ☆158Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆116Updated 2 weeks ago
- ☆41Updated last week
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- ☆35Updated last week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- comseg☆24Updated 11 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- ☆53Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆102Updated 3 weeks ago
- ☆18Updated 2 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- A toolkit for processing multiplexed tissue images☆67Updated 2 weeks ago
- ☆52Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆65Updated this week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Updated last month
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 6 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 8 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆99Updated 11 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 9 months ago