chenhcs / SCS
Sub-cellular spatial transcriptomics Cell Segmentation
☆60Updated last year
Alternatives and similar repositories for SCS:
Users that are interested in SCS are comparing it to the libraries listed below
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆38Updated 7 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆70Updated last year
- ☆48Updated 3 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆71Updated last year
- ☆34Updated 10 months ago
- domain adaptation of spatial and single-cell transcriptome☆25Updated 5 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 7 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆59Updated 8 months ago
- ☆44Updated 4 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 3 years ago
- ☆37Updated 2 years ago
- ☆25Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆106Updated this week
- data for spacejam2☆17Updated 2 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆52Updated 11 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆74Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆30Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆43Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- Bayesian Analytics for Spatial Segmentation☆23Updated 4 months ago
- ☆31Updated last month
- ☆37Updated 2 months ago
- ☆14Updated 2 years ago
- ☆46Updated 8 months ago
- ☆114Updated 2 months ago
- ☆41Updated this week
- Code used to benchmark Xenium☆43Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆60Updated last year