Sub-cellular spatial transcriptomics Cell Segmentation
☆70Oct 1, 2023Updated 2 years ago
Alternatives and similar repositories for SCS
Users that are interested in SCS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 6 months ago
- ☆17Dec 7, 2023Updated 2 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bayesian Segmentation of Spatial Transcriptomics Data☆206May 18, 2026Updated 3 weeks ago
- Static plotting for spatialdata☆82Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 24, 2025Updated 11 months ago
- ☆46Jun 1, 2026Updated last week
- ☆29Apr 26, 2024Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆27Apr 8, 2025Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for the THItoGene☆29Apr 9, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆368Jul 1, 2025Updated 11 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 5 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆27Oct 12, 2024Updated last year
- ☆19Jan 6, 2024Updated 2 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆263Feb 9, 2026Updated 4 months ago
- ☆71Sep 16, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Spatial analysis of FISH data☆33Updated this week
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆36May 15, 2026Updated 3 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 11 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- ☆53Oct 9, 2025Updated 8 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆99Dec 11, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆461Jan 22, 2026Updated 4 months ago
- Spatial Single Cell Analysis in Python☆575Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26May 26, 2026Updated 2 weeks ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆66Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Jun 1, 2026Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆17Jun 15, 2023Updated 2 years ago