theislab / spapros
Python package for Probe set selection for targeted spatial transcriptomics.
☆25Updated this week
Related projects ⓘ
Alternatives and complementary repositories for spapros
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 2 weeks ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- Analyzing cellular niches in spatial transcriptomics data☆27Updated this week
- ☆20Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last month
- CAST package☆25Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- ☆38Updated last month
- Identification of spatial homogeneous regions☆19Updated last month
- ☆21Updated 4 years ago
- AnnData interoperability in R☆58Updated this week
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆20Updated 3 months ago
- An R package for performing cell typing in SMI and other single cell data☆29Updated 3 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆45Updated last week
- ☆23Updated 2 months ago
- Spatial Single Cell transcriptomic library☆17Updated 8 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆23Updated 2 years ago
- ☆23Updated last month
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆23Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆19Updated this week
- ☆39Updated this week
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆12Updated 2 years ago
- ☆47Updated last year