Python package for Probe set selection for targeted spatial transcriptomics.
☆51Nov 8, 2025Updated 7 months ago
Alternatives and similar repositories for spapros
Users that are interested in spapros are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 2 months ago
- Build contrasts for models defined with formulaic☆13Updated this week
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆84Nov 13, 2025Updated 7 months ago
- Registry for scverse ecosystem packages☆37Updated this week
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 10 months ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆283Jun 24, 2026Updated last week
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆101Dec 11, 2023Updated 2 years ago
- ☆49Jan 28, 2026Updated 5 months ago
- ☆17Dec 7, 2023Updated 2 years ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆87Mar 20, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆39Apr 30, 2026Updated 2 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆139Jun 25, 2026Updated last week
- Multi-resolution Variational Inference☆23May 25, 2026Updated last month
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆12May 30, 2023Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆26Feb 26, 2026Updated 4 months ago
- ☆37Oct 22, 2025Updated 8 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- ☆35Dec 22, 2024Updated last year
- ☆13Sep 3, 2025Updated 10 months ago
- ☆24Mar 4, 2026Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jun 22, 2026Updated last week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆378Jun 26, 2026Updated last week
- The complete FlowSOM package known from R, now available in Python!☆32Updated this week
- Non-parametric density inference for single-cell analysis.☆75Apr 10, 2026Updated 2 months ago
- ☆14Jan 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- Cross-attention-based cell-cell interaction inference from ST data.☆21Jun 28, 2026Updated last week
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆12Apr 19, 2023Updated 3 years ago
- ☆13Aug 9, 2022Updated 3 years ago