theislab / spaprosLinks
Python package for Probe set selection for targeted spatial transcriptomics.
☆40Updated last month
Alternatives and similar repositories for spapros
Users that are interested in spapros are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- CAST package☆40Updated 9 months ago
- Identification of spatial homogeneous regions☆21Updated 7 months ago
- ☆20Updated this week
- Interactive applications of stlearn☆15Updated 2 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- ☆58Updated 3 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆35Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- ☆55Updated this week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago
- ☆55Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆50Updated 3 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆114Updated this week
- ☆20Updated 4 months ago
- Multi-resolution Variational Inference☆23Updated 2 months ago
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 3 months ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆24Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year