☆15Feb 28, 2022Updated 4 years ago
Alternatives and similar repositories for JSTA
Users that are interested in JSTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated last month
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 3 years ago
- ☆28Oct 12, 2024Updated 2 years ago
- From geospatial to spatial -omics☆106Sep 26, 2026Updated last month
- ☆18Dec 7, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A list of awesome bioimage analysis challenges☆10Feb 1, 2022Updated 4 years ago
- Statistical Inference for Unsupervised Learning☆17Apr 7, 2026Updated 6 months ago
- DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images☆15Dec 1, 2021Updated 4 years ago
- Empirical Bayes methods for single cell data☆18Oct 12, 2020Updated 6 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 7 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆23May 19, 2025Updated last year
- MERFISH decoding software☆30Aug 16, 2025Updated last year
- ☆108Updated this week
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆24May 8, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 5 years ago
- ☆30Nov 21, 2019Updated 6 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆26May 3, 2023Updated 3 years ago
- Spatiotemporal modeling of spatial transcriptomics☆347Feb 25, 2026Updated 8 months ago
- R package for testing and visualizing gene list overlaps☆21Aug 22, 2016Updated 10 years ago
- Multimodal data alignment and cell type analysis with coupled autoencoders.☆10Nov 5, 2024Updated last year
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- ☆27Apr 18, 2018Updated 8 years ago
- ☆28Apr 8, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- ☆10Mar 8, 2024Updated 2 years ago
- ☆139Jun 10, 2022Updated 4 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 7 months ago
- Course on Deep Learning for imaging using PyTorch☆16Feb 2, 2022Updated 4 years ago
- An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.☆10Feb 8, 2019Updated 7 years ago
- ☆37Jun 15, 2026Updated 4 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆11Mar 13, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Feb 25, 2017Updated 9 years ago
- Spatial analysis of FISH data☆32Jun 5, 2026Updated 4 months ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- Example Notebooks that compare various python visualization libraries.☆14Dec 8, 2022Updated 3 years ago
- ☆11Oct 14, 2025Updated last year
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆32Sep 15, 2023Updated 3 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆16Apr 13, 2021Updated 5 years ago