wollmanlab / JSTALinks
☆15Updated 3 years ago
Alternatives and similar repositories for JSTA
Users that are interested in JSTA are comparing it to the libraries listed below
Sorting:
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- Spatial Single-Cell Analysis Toolkit☆104Updated 5 months ago
- ☆24Updated 7 months ago
- ☆41Updated last month
- Spatial analysis of FISH data☆34Updated 6 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- Python package for reading imaging mass cytometry (IMC) files☆17Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 2 weeks ago
- ☆39Updated last year
- ☆53Updated 4 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated 3 weeks ago
- comseg☆24Updated 10 months ago
- ☆80Updated last week
- A toolkit for processing multiplexed tissue images☆67Updated this week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆144Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆28Updated 2 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆70Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆51Updated 3 years ago
- Interactive applications of stlearn☆15Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆66Updated 5 months ago
- ☆56Updated last year
- ☆27Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 5 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆45Updated last week