wollmanlab / JSTALinks
☆15Updated 3 years ago
Alternatives and similar repositories for JSTA
Users that are interested in JSTA are comparing it to the libraries listed below
Sorting:
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- ☆41Updated last week
- ☆88Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Spatial analysis of FISH data☆34Updated 8 months ago
- ☆44Updated 3 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- comseg☆24Updated 11 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆67Updated 2 weeks ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- ☆27Updated last year
- Image Mass Cytometry analysis pipeline☆26Updated 8 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- ☆24Updated last week
- Python package for reading imaging mass cytometry (IMC) files☆18Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Updated 4 years ago
- ☆53Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- ☆52Updated 3 months ago
- ☆25Updated 9 months ago